CDS

Accession Number TCMCG016C21803
gbkey CDS
Protein Id OMO61981.1
Location complement(join(42117..42140,42256..42339,42460..42617,42778..42841,42980..43132,44420..44545,44768..44826,44909..44966,45097..45252,45355..45528,45744..45866))
Organism Corchorus capsularis
locus_tag CCACVL1_23087

Protein

Length 392aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01013360.1
Definition Transcription factor IIA, alpha/beta subunit [Corchorus capsularis]
Locus_tag CCACVL1_23087

EGGNOG-MAPPER Annotation

COG_category K
Description transcription initiation factor IIA
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K03122        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03022        [VIEW IN KEGG]
ko05203        [VIEW IN KEGG]
map03022        [VIEW IN KEGG]
map05203        [VIEW IN KEGG]
GOs GO:0000428        [VIEW IN EMBL-EBI]
GO:0000976        [VIEW IN EMBL-EBI]
GO:0000977        [VIEW IN EMBL-EBI]
GO:0000979        [VIEW IN EMBL-EBI]
GO:0001012        [VIEW IN EMBL-EBI]
GO:0001046        [VIEW IN EMBL-EBI]
GO:0001047        [VIEW IN EMBL-EBI]
GO:0001067        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005667        [VIEW IN EMBL-EBI]
GO:0005672        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006352        [VIEW IN EMBL-EBI]
GO:0006366        [VIEW IN EMBL-EBI]
GO:0006367        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016591        [VIEW IN EMBL-EBI]
GO:0017025        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0030880        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044212        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044798        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0051123        [VIEW IN EMBL-EBI]
GO:0055029        [VIEW IN EMBL-EBI]
GO:0061695        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065004        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070897        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071824        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090575        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]
GO:1990837        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCCTCGTCGACAACGAGCGCGGTGTACATCCACGTCATTGAAGACGTCATCAGCAAGGTTCGCGATGAGTTCATCAACAACGGTGGACCCGGCGAAGCTGTCCTTAATGAACTTCAAGGAATTTGGGAGATGAAGATGATGCGAGCTGGAGTAATATGCGGTCCAATAGATAGGTCTTCAGGTCAGAAACAGCCCACTCCTGGTGGCCCTATTACTCCGGTTCATGATCTTAATGTTCCTTATGAAGGGACTGAAGAGTACGAAACTCCTACTGCTGATATGCTTTTCCCTCCGACTCCATTGCAAACACCGGCTCCTACACCTTTGCCTGGAAGTGCAGATGGTTCTATGTATAACATCCCTACTGGAAGCAGTGACTACCCTACTCCTGTAAATGATAATAGTGGTGGCAATACTGATGTGAAAGGTGCCAGGCCAAGCCCTTATGCGCAATCTCCTTCTCCTTGGCCCAATCAAAGGACCCCACTGAGTGTTGATGTTAATGTTGCTTATGTAGAAGGGCGGGAAGAGGGGGACAGAGGAACATCAAATCAACCTCTGACCCAGGACTTCTTTACGATGTCTGCTGGAAAGCGAAAGCGTGAGGATTTTGCTACACAATATCATAATAGTGGTTATATACCCCAACAAGATGGAGCTGGAGATGTTACATCTGAAGTCACAAATCTAGAGGGAAGTAAGGGTGATAATGATCTGGATAGATGTTACTCGGCAACCACTGAAAAAATCAAGGTTGAAGCACCCTCAGTTACGTCATCTTCAAAGATTCCTCAACAAGATGGACCGATTCCTGATCCATATGATGATATGCTTTCTACTCCCAATATATACAATTATCAAGGAGTTGTCAATGAAGACTACAATGTAGTAAACACACCGGCTCCTAATGACCTTCAGGCTGCCACTCCTGCCCCTGTTCCCCAAAATGACACAGGAGATGATGACGACGATGAGCCATTGAATGAAGATGATGATGATGATCTGGATGATGTTGACCAAGGAGAGGATATGAACACAGCGCATCTAGTTTTGGCTCAATTTGACAAGGTGACTCGTACCAAGAGCCGATGGAAATGCACACTGAAGGATGGAATCATGCATATAAATAACAAAGACATTCTCTTTAACAAGGCAACCGGAGAATTTGAATTCTGA
Protein:  
MASSTTSAVYIHVIEDVISKVRDEFINNGGPGEAVLNELQGIWEMKMMRAGVICGPIDRSSGQKQPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPAPTPLPGSADGSMYNIPTGSSDYPTPVNDNSGGNTDVKGARPSPYAQSPSPWPNQRTPLSVDVNVAYVEGREEGDRGTSNQPLTQDFFTMSAGKRKREDFATQYHNSGYIPQQDGAGDVTSEVTNLEGSKGDNDLDRCYSATTEKIKVEAPSVTSSSKIPQQDGPIPDPYDDMLSTPNIYNYQGVVNEDYNVVNTPAPNDLQAATPAPVPQNDTGDDDDDEPLNEDDDDDLDDVDQGEDMNTAHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF